We present MatUQ, a benchmark framework for evaluating graph neural networks (GNNs) on out-of-distribution (OOD) materials property prediction with uncertainty quantification (UQ). MatUQ comprises 1,375 OOD prediction tasks constructed from six materials datasets using five OFM-based and a newly proposed structure-aware splitting strategy, SOAP-LOCO, which captures local atomic environments more effectively. We evaluate 12 representative GNN models under a unified uncertainty-aware training protocol that combines Monte Carlo Dropout and Deep Evidential Regression (DER), and introduce a novel uncertainty metric, D-EviU, which shows the strongest correlation with prediction errors in most tasks. Our experiments yield two key findings. First, the uncertainty-aware training approach significantly improves model prediction accuracy, reducing errors by an average of 70.6\% across challenging OOD scenarios. Second, the benchmark reveals that no single model dominates universally: earlier models such as SchNet and ALIGNN remain competitive, while newer models like CrystalFramer and SODNet demonstrate superior performance on specific material properties. These results provide practical insights for selecting reliable models under distribution shifts in materials discovery.

Accurate property data for chemical elements is crucial for materials design and manufacturing, but many of them are difficult to measure directly due to equipment constraints. While traditional methods use the properties of other elements or related properties for prediction via numerical analyses, they often fail to model complex relationships. After all, not all characteristics can be represented as scalars. Recent efforts have been made to explore advanced AI tools such as language models for property estimation, but they still suffer from hallucinations and a lack of interpretability. In this paper, we investigate Element2Vecto effectively represent chemical elements from natural languages to support research in the natural sciences. Given the text parsed from Wikipedia pages, we use language models to generate both a single general-purpose embedding (Global) and a set of attribute-highlighted vectors (Local). Despite the complicated relationship across elements, the computational challenges also exist because of 1) the discrepancy in text distribution between common descriptions and specialized scientific texts, and 2) the extremely limited data, i.e., with only 118 known elements, data for specific properties is often highly sparse and incomplete. Thus, we also design a test-time training method based on self-attention to mitigate the prediction error caused by Vanilla regression clearly. We hope this work could pave the way for advancing AI-driven discovery in materials science.

Accurate prediction of material properties facilitates the discovery of novel materials with tailored functionalities. Deep learning models have recently shown superior accuracy and flexibility in capturing structure-property relationships. However, these models often rely on supervised learning, which requires large, well-annotated datasets an expensive and time-consuming process. Self-supervised learning (SSL) offers a promising alternative by pretraining on large, unlabeled datasets to develop foundation models that can be fine-tuned for material property prediction. In this work, we propose supervised pretraining, where available class information serves as surrogate labels to guide learning, even when downstream tasks involve unrelated material properties. We evaluate this strategy on two state-of-the-art SSL models and introduce a novel framework for supervised pretraining. To further enhance representation learning, we propose a graph-based augmentation technique that injects noise to improve robustness without structurally deforming material graphs. The resulting foundation models are fine-tuned for six challenging material property predictions, achieving significant performance gains over baselines, ranging from 2% to 6.67% improvement in mean absolute error (MAE) and establishing a new benchmark in material property prediction. This study represents the first exploration of supervised pertaining with surrogate labels in material property prediction, advancing methodology and application in the field.

Materials informatics (MI), which emerges from the integration of materials science and data science, is expected to greatly streamline material discovery and development. The data used for MI are obtained from both computational and experimental studies, while their integration remains challenging. In our previous study, we reported the integration of these datasets by applying a machine learning model that captures trends hidden in the experimental datasets to compositional data stored in the computational database. In this study, we use the obtained data to construct materials maps, which visualize the relation in the structural features of materials, aiming to support study by the experimental researchers. The map is constructed using a MatDeepLearn (MDL) framework, which implements the graph-based representation of material structures, deep learning, and dimensional reduction for map construction. We evaluate the obtained materials maps through statistical analysis and found that MDL using message passing neural network (MPNN) architecture enables efficient extraction of features that reflect the structural complexity of materials. Moreover, we found that this advantage does not necessarily translate into improved accuracy in the prediction of material properties. We assume this unexpected outcome to the high learning performance inherent in MPNN, which can contribute to the structuring of data points within the materials map.

Recent advancements in AI have revolutionized property prediction in materials science and accelerating material discovery. Graph neural networks (GNNs) stand out due to their ability to represent crystal structures as graphs, effectively capturing local interactions and delivering superior predictions. However, these methods often lose critical global information, such as crystal systems and repetitive unit connectivity. To address this, we propose CAST, a cross-attention-based multimodal fusion model that integrates graph and text modalities to preserve essential material information. CAST combines node- and token-level features using cross-attention mechanisms, surpassing previous approaches reliant on material-level embeddings like graph mean-pooling or [CLS] tokens. A masked node prediction pretraining strategy further enhances atomic-level information integration. Our method achieved up to 22.9\% improvement in property prediction across four crystal properties including band gap compared to methods like CrysMMNet and MultiMat. Pretraining was key to aligning node and text embeddings, with attention maps confirming its effectiveness in capturing relationships between nodes and tokens. This study highlights the potential of multimodal learning in materials science, paving the way for more robust predictive models that incorporate both local and global information.

Predicting properties of crystals from their structures is a fundamental yet challenging task in materials science. Unlike molecules, crystal structures exhibit infinite periodic arrangements of atoms, requiring methods capable of capturing both local and global information effectively. However, most current works fall short of capturing long-range interactions within periodic structures. To address this limitation, we leverage reciprocal space to efficiently encode long-range interactions with learnable filters within Fourier transforms. We introduce Reciprocal Geometry Network (ReGNet), a novel architecture that integrates geometric GNNs and reciprocal blocks to model short-range and long-range interactions, respectively. Additionally, we introduce ReGNet-MT, a multi-task extension that employs mixture of experts (MoE) for multi-property prediction. Experimental results on the JARVIS and Materials Project benchmarks demonstrate that ReGNet achieves significant performance improvements. Moreover, ReGNet-MT attains state-of-the-art results on two bandgap properties due to positive transfer, while maintaining high computational efficiency. These findings highlight the potential of our model as a scalable and accurate solution for crystal property prediction. The code will be released upon paper acceptance.

When designing materials to optimize certain properties, there are often many possible configurations of designs that need to be explored. For example, the materials' composition of elements will affect properties such as strength or conductivity, which are necessary to know when developing new materials. Exploring all combinations of elements to find optimal materials becomes very time consuming, especially when there are more design variables. For this reason, there is growing interest in using machine learning (ML) to predict a material's properties. In this work, we model the optimization of certain material properties as a tensor completion problem, to leverage the structure of our datasets and navigate the vast number of combinations of material configurations. Across a variety of material property prediction tasks, our experiments show tensor completion methods achieving 10-20% decreased error compared with baseline ML models such as GradientBoosting and Multilayer Perceptron (MLP), while maintaining similar training speed.

In this study, we explore the use of a transformer-based language model as an encoder to predict the band gaps of semiconductor materials directly from their text descriptions. Quantum chemistry simulations, including Density Functional Theory (DFT), are computationally intensive and time-consuming, which limits their practicality for high-throughput material screening, particularly for complex systems. Shallow machine learning (ML) models, while effective, often require extensive data preprocessing to convert non-numerical material properties into numerical inputs. In contrast, our approach leverages textual data directly, bypassing the need for complex feature engineering. We generate material descriptions in two formats: formatted strings combining features and natural language text generated using the ChatGPT API. We demonstrate that the RoBERTa model, pre-trained on natural language processing tasks, performs effectively as an encoder for prediction tasks. With minimal fine-tuning, it achieves a mean absolute error (MAE) of approximately 0.33 eV, performing better than shallow machine learning models such as Support Vector Regression, Random Forest, and XGBoost. Even when only the linear regression head is trained while keeping the RoBERTa encoder layers frozen, the accuracy remains nearly identical to that of the fully trained model. This demonstrates that the pre-trained RoBERTa encoder is highly adaptable for processing domain-specific text related to material properties, such as the band gap, significantly reducing the need for extensive retraining. This study highlights the potential of transformer-based language models to serve as efficient and versatile encoders for semiconductor materials property prediction tasks.

Large language models (LLMs) are increasingly being used in materials science. However, little attention has been given to benchmarking and standardized evaluation for LLM-based materials property prediction, which hinders progress. We present LLM4Mat-Bench, the largest benchmark to date for evaluating the performance of LLMs in predicting the properties of crystalline materials. LLM4Mat-Bench contains about 1.9M crystal structures in total, collected from 10 publicly available materials data sources, and 45 distinct properties. LLM4Mat-Bench features different input modalities: crystal composition, CIF, and crystal text description, with 4.7M, 615.5M, and 3.1B tokens in total for each modality, respectively. We use LLM4Mat-Bench to fine-tune models with different sizes, including LLM-Prop and MatBERT, and provide zero-shot and few-shot prompts to evaluate the property prediction capabilities of LLM-chat-like models, including Llama, Gemma, and Mistral. The results highlight the challenges of general-purpose LLMs in materials science and the need for task-specific predictive models and task-specific instruction-tuned LLMs in materials property prediction.

Machine learning has become a crucial tool for predicting the properties of crystalline materials. However, existing methods primarily represent material information by constructing multi-edge graphs of crystal structures, often overlooking the chemical and physical properties of elements (such as atomic radius, electronegativity, melting point, and ionization energy), which have a significant impact on material performance. To address this limitation, we first constructed an element property knowledge graph and utilized an embedding model to encode the element attributes within the knowledge graph. Furthermore, we propose a multimodal fusion framework, ESNet, which integrates element property features with crystal structure features to generate joint multimodal representations. This provides a more comprehensive perspective for predicting the performance of crystalline materials, enabling the model to consider both microstructural composition and chemical characteristics of the materials. We conducted experiments on the Materials Project benchmark dataset, which showed leading performance in the bandgap prediction task and achieved results on a par with existing benchmarks in the formation energy prediction task.